An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Versatile open-source tool for microbiome analysis
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Randomly subsample sequencing reads or alignments
A collection of scripts and notes related to genomics and bioinformatics
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Viral genomics analysis pipelines
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Detect and visualize target mutations by scanning FastQ files directly
NGLess: NGS with less work
💾 📃 "Reads to report" for public health and clinical microbiology
FastQC port to Qt5: A quality control tool for high throughput sequence data.