Official git repository for Biopython (originally converted from CVS)
#计算机科学#DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official code repository for GATK versions 4 and up
Data intensive science for everyone.
Python and C++ code for reading and writing genomics data.
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
A Go package for engineering organisms.
#计算机科学#Foundation Models for Genomics & Transcriptomics
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Efficient pythonic random access to fasta subsequences
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
a JavaScript DNA, RNA, and protein sequence viewer
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads