Official git repository for Biopython (originally converted from CVS)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Versatile open-source tool for microbiome analysis
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Align proteins to genomes with splicing and frameshift
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
A fast multiple sequence alignment program.
Comparative Genomics Toolkit 3
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Neural Networks for Protein Sequence Alignment
Rust bindings to minimap2 library