Python library to facilitate genome assembly, annotation, and comparative genomics
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Viral genomics analysis pipelines
KubeGene - A turn-key Genome Sequencing workflow management framework
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
A modern genomics framework for julia
Bioinformatics on GCP, AWS or Azure
#Awesome#A collection of publications on comparison of high-throughput sequencing technologies.
Allele-specific copy number estimation with whole genome sequencing
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
FQSqueezer - FASTQ compressor based on k-mer statistics
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.