genomics

Official git repository for Biopython (originally converted from CVS)

#计算机科学#DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Official code repository for GATK versions 4 and up

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Data intensive science for everyone.

#计算机科学#A collaboratively written review paper on deep learning, genomics, and precision medicine

tools for working with genome variation graphs

🧬 gget enables efficient querying of genomic reference databases

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Scripts to download genomes from the NCBI FTP servers

Cloud-native genomic dataframes and batch computing

A comprehensive tutorial about GWAS and PRS

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Python library to handle Gene Ontology (GO) terms

Python library to facilitate genome assembly, annotation, and comparative genomics

Python and C++ code for reading and writing genomics data.

The next version of bwa-mem

Tools to process and analyze deep sequencing data.

A fast and sensitive gapped read aligner