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集合主题趋势排行榜
#

ngs

Website
Wikipedia
https://static.github-zh.com/github_avatars/google?size=40
google / deepvariant

#计算机科学#DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Tensorflow深度神经网络genomicssciencednasequencinggenomeBioinformatics深度学习ngs机器学习
Python 3.42 k
1 个月前
https://static.github-zh.com/github_avatars/OpenGene?size=40
OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastqqcpreprocessingfilteringadapteroverlapCode qualitytrimmingsplittingquality-controlfilterngsBioinformaticsumisequencing
C++ 2.1 k
9 天前
https://static.github-zh.com/github_avatars/broadinstitute?size=40
broadinstitute / gatk

Official code repository for GATK versions 4 and up

genomicsApache SparksciencednangssequencinggenomeBioinformatics
Java 1.81 k
2 天前
https://static.github-zh.com/github_avatars/galaxyproject?size=40
galaxyproject / galaxy

Data intensive science for everyone.

Bioinformaticsworkflowgenomicssciencesequencingngsdnausegalaxypipelineworkflow-engineHacktoberfest
Python 1.51 k
4 天前
https://static.github-zh.com/github_avatars/samtools?size=40
samtools / htslib

C library for high-throughput sequencing data formats

htslibBioinformaticssambamcramvcfbcfngs
C 856
3 天前
https://static.github-zh.com/github_avatars/pysam-developers?size=40
pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, ...

BioinformaticsngsPythonhtslib
Cython 832
6 天前
https://static.github-zh.com/github_avatars/deeptools?size=40
deeptools / deepTools

Tools to process and analyze deep sequencing data.

PythonBioinformaticsgenomicsngs
Python 720
2 个月前
https://static.github-zh.com/github_avatars/flowhub-team?size=40
flowhub-team / awesome-omics

A collection of awesome things regarding all omics.

genomicsproteinngsAwesome Lists
508
1 个月前
https://static.github-zh.com/github_avatars/lindenb?size=40
lindenb / jvarkit

Java utilities for Bioinformatics

BioinformaticsJavangssciencebiologygenomics
Java 501
17 天前
https://static.github-zh.com/github_avatars/aidenlab?size=40
aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

genomicsBioinformaticsngs
Shell 444
7 个月前
https://static.github-zh.com/github_avatars/maxplanck-ie?size=40
maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

ngsworkflowsnakemake
Python 397
13 天前
https://static.github-zh.com/github_avatars/bioconvert?size=40
bioconvert / bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

ngsconversionsequencesnifferBioinformatics
Python 378
2 年前
https://static.github-zh.com/github_avatars/galaxyproject?size=40
galaxyproject / training-material

A collection of Galaxy-related training material

usegalaxytrainingmaterialsngs教程metagenomicsproteomicsHacktoberfest
HTML 332
3 天前
https://static.github-zh.com/github_avatars/fulcrumgenomics?size=40
fulcrumgenomics / fgbio

Tools for working with genomic and high throughput sequencing data.

umiBioinformaticsngsScalagenomics
Scala 331
11 天前
https://static.github-zh.com/github_avatars/samtools?size=40
samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

genomicssequencingdnangsbamcramsamvcfjava-apiJava
Java 285
6 天前
https://static.github-zh.com/github_avatars/sortmerna?size=40
sortmerna / sortmerna

SortMeRNA: next-generation sequence filtering and alignment tool

C++PythonalignmentBioinformaticsngssequencing
C++ 270
5 个月前
https://static.github-zh.com/github_avatars/lgmgeo?size=40
lgmgeo / AnnotSV

Annotation and Ranking of Structural Variation

annotationrankingngs
Tcl 259
3 个月前
https://static.github-zh.com/github_avatars/ugeneunipro?size=40
ugeneunipro / ugene

UGENE is free open-source cross-platform bioinformatics software

BioinformaticsngsdnaworkflowpipelinescienceC++Qtsequencingcross-platform
C++ 238
5 天前
https://static.github-zh.com/github_avatars/open2c?size=40
open2c / cooler

A cool place to store your Hi-C

hdf5PythonsparsegenomicsBioinformaticsfile-formatngs
Python 216
6 天前
https://static.github-zh.com/github_avatars/OpenGene?size=40
OpenGene / AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

quality-controlfastqngssequencingBioinformaticsoverlaptrimmingfilteringerrorqc
Python 210
5 年前
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