Official git repository for Biopython (originally converted from CVS)
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Making Protein folding accessible to all!
#计算机科学#Protein Graph Library
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Foldseek enables fast and sensitive comparisons of large structure sets.
#计算机科学#Standardized data set for machine learning of protein structure
Working with molecular structures in pandas DataFrames
#计算机科学#Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Optimizing AlphaFold Training and Inference on GPU Clusters
Remote protein homology detection suite.
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
#计算机科学#Get protein embeddings from protein sequences
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Molecular simulation in Julia
#计算机科学#An open-source platform for developing protein models beyond AlphaFold.
#计算机科学#An all-atom protein structure dataset for machine learning.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm