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集合主题趋势排行榜
#

protein-structure-prediction

Website
Wikipedia
https://static.github-zh.com/github_avatars/lucidrains?size=40
lucidrains / alphafold3-pytorch

#计算机科学#Implementation of Alphafold 3 from Google Deepmind in Pytorch

人工智能深度学习attention-mechanismsdenoising-diffusiontransformersprotein-structure-prediction
Python 1.45 k
5 个月前
https://static.github-zh.com/github_avatars/PaddlePaddle?size=40
PaddlePaddle / PaddleHelix

#计算机科学#Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

biocomputing机器学习深度学习rna-structure-predictiondtirepresentation-learninggraph-networksprotein-structure-predictionself-supervised-learningppiprotein-folding
Python 1.07 k
20 天前
https://static.github-zh.com/github_avatars/RosettaCommons?size=40
RosettaCommons / PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

google-colabJupyter Notebookprotein-structure-predictionprotein-foldingdnarna-structure-predictionrosetta
Jupyter Notebook 575
10 个月前
https://static.github-zh.com/github_avatars/Urinx?size=40
Urinx / alphafold_pytorch

#计算机科学#An implementation of the DeepMind's AlphaFold based on PyTorch for research

alphafoldprotein-structure-prediction深度学习pytorch-implementation
Python 395
4 年前
https://static.github-zh.com/github_avatars/Graylab?size=40
Graylab / DL4Proteins-notebooks

#计算机科学#Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

convolutional-neural-networks深度学习diffusion-modelsgraph-neural-networksjupyter-notebookslanguage-modelneural-networksprotein-structure-prediction
Jupyter Notebook 394
2 个月前
https://static.github-zh.com/github_avatars/aqlaboratory?size=40
aqlaboratory / rgn

#计算机科学#Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

protein-structureprotein-structure-prediction深度学习深度神经网络
Python 327
6 年前
https://static.github-zh.com/github_avatars/FreshAirTonight?size=40
FreshAirTonight / af2complex

#计算机科学#Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

Bioinformatics深度学习alphafold2protein-structure-prediction
Python 162
9 个月前
https://static.github-zh.com/github_avatars/zjunlp?size=40
zjunlp / OntoProtein

#自然语言处理#[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

protein-structure-predictionknowledge-graphproteinbert自然语言处理PyTorchpretrained-modelspretrainingiclr
Python 147
3 个月前
https://static.github-zh.com/github_avatars/ml4bio?size=40
ml4bio / Dense-Homolog-Retrieval

Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

alphafoldproteinprotein-structure-prediction
Python 106
10 个月前
https://static.github-zh.com/github_avatars/twoXes?size=40
twoXes / awesome-structural-bioinformatics

#Awesome#Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Chemistry机器学习深度学习cheminformaticsbiologyquantum-chemistrydockingproteinalphafoldprotein-structure-predictionAwesome ListsBioinformaticsproteomicsgenomicsprotein-structure
Python 72
2 年前
https://static.github-zh.com/github_avatars/psipred?size=40
psipred / DMPfold

#计算机科学#De novo protein structure prediction using iteratively predicted structural constraints

protein-structure-prediction深度学习protein-structureresnet
C 57
3 年前
https://static.github-zh.com/github_avatars/psipred?size=40
psipred / DMPfold2

#计算机科学#Fast and accurate protein structure prediction

protein-structure-prediction深度学习multiple-sequence-alignmentend-to-end
Python 52
5 个月前
https://static.github-zh.com/github_avatars/mircare?size=40
mircare / Porter5

#计算机科学#Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

机器学习深度学习protein-structure-prediction
C++ 45
5 年前
https://static.github-zh.com/github_avatars/lightdock?size=40
lightdock / lightdock-rust

A Rust implementation of the LightDock macromolecular docking software

dockingprotein-structure-predictionproteinprotein-structureBioinformatics
Rust 29
1 年前
https://static.github-zh.com/github_avatars/Bhattacharya-Lab?size=40
Bhattacharya-Lab / PolyFold

An interactive visual simulator for distance-based protein folding

protein-foldingstochastic-optimizationprotein-structure-prediction
Java 24
4 年前
https://static.github-zh.com/github_avatars/MPI-Dortmund?size=40
MPI-Dortmund / pymissense

#计算机科学#PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.

深度学习protein-sequencesprotein-structureprotein-structure-prediction
Python 23
2 年前
https://static.github-zh.com/github_avatars/Bitbol-Lab?size=40
Bitbol-Lab / DiffPALM

#计算机科学#Differentiable Pairing using Alignment-based Language Models

Bioinformaticslanguage-model机器学习multiple-sequence-alignmentprotein-sequencesprotein-structure-prediction
Jupyter Notebook 22
1 年前
https://static.github-zh.com/github_avatars/NilsDunlop?size=40
NilsDunlop / PROTACFold

#计算机科学#A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.

alphafold深度学习generative-aiprotein-structure-prediction
Python 21
22 天前
https://static.github-zh.com/github_avatars/Eryk96?size=40
Eryk96 / NetSurfP-3.0

NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction

PythonPyTorchprotein-structure-predictionDocker
Jupyter Notebook 20
2 年前
https://static.github-zh.com/github_avatars/okkevaneck?size=40
okkevaneck / prospr

#数据仓库#Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available a...

proteinprotein-foldingtoolboxC++Pythonpackageprotein-structure-prediction数据集high-performance-computingcomputational-scienceBioinformatics
C++ 17
25 天前
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