virology

#数据仓库#2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)

Infectious Disease Sequencing Platform

Unpivoted and cleaned data sets on the COVID-19 pandemic

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

VAPiD: Viral Annotation and Identification Pipeline

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Reconstruction and analysis of viral and host genomes at multi-organ level

Detect iSNV and construct whole viral genomes from metagenomic samples

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics anal...

Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".

A software to detect virome-wide integrations

FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.

genetic distance plotting for recombination events analysis

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignme...

The art of decorating a phage genome by gluing feature cutouts into it.

BioMight - Human Biological Animation Engine

NGS data analysis scripts for HBV elimination research group

Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>