#数据仓库#2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
Infectious Disease Sequencing Platform
Unpivoted and cleaned data sets on the COVID-19 pandemic
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
VAPiD: Viral Annotation and Identification Pipeline
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Reconstruction and analysis of viral and host genomes at multi-organ level
Detect iSNV and construct whole viral genomes from metagenomic samples
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics anal...
Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.
genetic distance plotting for recombination events analysis
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignme...
The art of decorating a phage genome by gluing feature cutouts into it.
NGS data analysis scripts for HBV elimination research group
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
