Unix, R and python tools for genomics and data science
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
#Awesome#A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Personal Cancer Genome Reporter (PCGR)
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Lollipop-style mutation diagrams for annotating genetic variations.
A visualization grammar and GPU-accelerated toolkit for genomic data
#计算机科学#Training and evaluating a variational autoencoder for pan-cancer gene expression data
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in e...
microsatellite instability detection using tumor only or paired tumor-normal data
What you need to process the Quarterly DepMap-Omics releases from Terra
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file)....