#数据仓库#2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Materials and presentation for the 2023 ISB Microbiome course.
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Model to simulate the population dynamics of four Aedes mosquito species.
Systematic assessment of the impacts of climate change on human pathogenic diseases
Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"
#自然语言处理#Curated data and source articles for microbial strains (Strain Tagger) and human microbial pathogens (Pathogen Identifier) datasets. Over 3,500 tagged entities from hundreds of full-length articles.
Untangling the pea root rot complex leads to the identification of microbial markers for plant health
Course on bioinformatics (linux intro + DNA sequencing pipeline) for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)
Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
galaxy wf detect pathogens in MinION data