🧬 gget enables efficient querying of genomic reference databases
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
A Python API for the RCSB Protein Data Bank (PDB)
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
#计算机科学#A deep learning toolkit for mass spectrometry
#Awesome#Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
#计算机科学#DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
#计算机科学#Deep (Transfer) Learning for Peptide Retention Time Prediction
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
#计算机科学#Fast and flexible semi-supervised learning for peptide detection in Python
National Microbiome Data Collaborative (NMDC) unified data model
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
#计算机科学#pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
pyQms, generalized, fast and accurate mass spectrometry data quantification
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python