C library for high-throughput sequencing data formats
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, ...
SeqAn's official repository.
nim wrapper for htslib for parsing genomics data files
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
BigWig manpulation tools using libBigWig and htslib
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
Use simple expressions to filter a BAM/CRAM file
