pubmed

#安全#Local Deep Research achieves ~95% on SimpleQA benchmark (tested with GPT-4.1-mini). Supports local and cloud LLMs (Ollama, Google, Anthropic, ...). Searches 10+ sources - arXiv, PubMed, web, and your ...

#自然语言处理#BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

#自然语言处理#BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

EasyPubMed is an extension to make new PubMed easy to use

#大语言模型#BioMCP: Biomedical Model Context Protocol

I, Librarian - open-source version of a PDF managing SaaS.

#网络爬虫#Findpapers: A tool for helping researchers who are looking for related works

#大语言模型#An agentic AI application that allows you to chat with your papers and gather also information from papers on ArXiv and on PubMed

A high performance bibliographic information service: https://biblio-glutton.readthedocs.io

#自然语言处理#NLP framework in python for entity recognition and relationship extraction

#自然语言处理#SciFive: a text-text transformer model for biomedical literature

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

#自然语言处理#VerifAI initiative to build open-source easy-to-deploy generative question-answering engine that can reference and verify answers for correctness (using posteriori model)

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

#自然语言处理#BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.

A Python package to download full article PDFs from OA publications

#算法刷题#ReCiter: an enterprise open source author disambiguation system for academic institutions

Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers