Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Nextstrain build for mpox virus
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
SARS-CoV-2 variant growth rates and frequency forecasts
Parallelization of Nextstrain builds and parameter testing using Nextflow
BA.2.86 project with Sigal lab
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus