MDAnalysis is a Python library to analyze molecular dynamics simulations.
Interaction Fingerprints for protein-ligand complexes and more
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
Fast and accurate aerodynamic modeling using general numerical lifting-line theory.
a python package for the interfacial analysis of molecular simulations
A toolkit featured artificial intelligence × ab initio for computational chemistry research.
MDAnalysis tool to calculate membrane curvature.
a logistics and persistence engine for the analysis of molecular dynamics trajectories
pKa estimates for proteins using an ensemble approach
Command line interface for MDAnalysis
Analyse Rotational Diffusion Tensor from MD Simulations
Access to data for workshops and extended tests of MDAnalysis.
Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
Molecular visualization for MDAnalysis with MolecularNodes in Blender
SAPT energy calculator built using MDAnalysis and Psi4
Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
User friendly molecular dynamics simulation combining GROMACS and Google Colab: A complete guide
