moshi4 / pybarrnap

Web-based molecule sketcher

Gene-flank analysis tool

Interactive JSON filter using jq

Themes for ggplot2.

skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.

A taxonomic classifier of plasmids

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

Pipeline for analysing intergenic regions in bacteria

RNA secondary structure/sequence profiles for homology search and alignment

Catalogue of pairwise alignment algorithms and benchmarks

📈 The fastest (for very small maps!) alternative of Rust HashMap, which doesn't use hashing and doesn't use heap (aka "linear map")

A large-scale language model for scientific domain, trained on redpajama arXiv split