saezlab / liana-py

LIANA: a LIgand-receptor ANalysis frAmework

CAusal Reasoning for Network Identification with integer VALue programming in R

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

modified version of CNORode including: steady state penalty, L1 regularisation, bootstrap, new transfer function

single cell Flux Estimation Analysis (scFEA) Try the below web server!

LIANA x Tensor-cell2cell Protocols

ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

A package to help convert different single-cell data formats to each other

Python package to perform enrichment analysis from omics data.

机器学习相关的框架、库、软件精选

Perturbation Analysis in the scverse ecosystem.

#计算机科学#Multiview Intercellular SpaTial modeling framework

Gene Set Enrichment Analysis in Python

RNA Velocity generalized through dynamical modeling

#计算机科学#Deep probabilistic analysis of single-cell and spatial omics data