gpertea / gffread

Transcript assembly and quantification for RNA-Seq

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

A program for assessing the T2T genome continuity

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCB...

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

A toolbox for pangenome analysis and threshold evaluation.

Polygenic Transmission Disequilibrium Test (pTDT)

This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to disco...

✨ The Next Gen Airtable Alternative: No-Code Postgres

R package for the analysis of massive SNP arrays.

Create and modify Word documents with Python

PLMSearch enables accurate and fast homologous protein search with only sequences as input

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Scripts to import your FeatureCounts output into DEXSeq

The RedPajama-Data repository contains code for preparing large datasets for training large language models.

HyPhy: Hypothesis testing using Phylogenies