CompOmics / DeepLC

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

Report processing and protein quantification for MS-based proteomics

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Proteomics search & quantification so fast that it feels like magic

AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

Picotti lab data analysis package.

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.