theislab / scgen

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

https://www.sc-best-practices.org

#计算机科学#CellRank: dynamics from multi-view single-cell data

Deep count autoencoder for denoising scRNA-seq data

A package to help convert different single-cell data formats to each other

single cell Flux Estimation Analysis (scFEA) Try the below web server!

LIANA x Tensor-cell2cell Protocols

LIANA+: an all-in-one framework for cell-cell communication

ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

机器学习相关的框架、库、软件精选

RNA Velocity generalized through dynamical modeling

Methods for detecting doublets in single-cell sequencing data

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

A toolkit for single-cell immune profiling

#计算机科学#Reference mapping for single-cell genomics

Python package to perform enrichment analysis from omics data.